TBX22

T-box transcription factor TBX22 is a protein that in humans is encoded by the TBX22 gene.

TBX22
Identifiers
Aliases	TBX22, ABERS, CLPA, CPX, TBXX, dJ795G23.1, T-box 22, T-box transcription factor 22
External IDs	OMIM: 300307; MGI: 2389465; HomoloGene: 9666; GeneCards: TBX22; OMA:TBX22 - orthologs
Gene location (Human) Chr. X chromosome (human) Band Xq21.1 Start 80,014,753 bp End 80,031,774 bp
Gene location (Mouse) Chr. X chromosome (mouse) Band X D|X 47.59 cM Start 106,711,570 bp End 106,732,584 bp
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in left testis right testis right lobe of thyroid gland left lobe of thyroid gland gonad right auricle Descending thoracic aorta popliteal artery tibial arteries ascending aorta Top expressed in tongue nasal septum ciliary body olfactory gland iris mandibular prominence maxillary prominence medial nasal prominence oral mucosa spermatocyte More reference expression data BioGPS n/a
Gene ontology Molecular function DNA-binding transcription factor activity DNA binding protein binding RNA polymerase II transcription regulatory region sequence-specific DNA binding DNA-binding transcription repressor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific Cellular component nucleus Biological process multicellular organism development negative regulation of transcription, DNA-templated regulation of transcription, DNA-templated negative regulation of transcription by RNA polymerase II transcription, DNA-templated Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 50945 245572 Ensembl ENSG00000277800 ENSG00000122145 ENSMUSG00000031241 UniProt Q9Y458 Q8K402 RefSeq (mRNA) NM_001109878 NM_001109879 NM_001303475 NM_016954 NM_001290747 NM_145224 NM_181319 RefSeq (protein) NP_001103348 NP_001103349 NP_001290404 NP_058650 NP_001277676 NP_660259 NP_851836 Location (UCSC) Chr X: 80.01 – 80.03 Mb Chr X: 106.71 – 106.73 Mb PubMed search
Wikidata
View/Edit Human View/Edit Mouse

TBX22 is a member of a phylogenetically conserved family of proteins that share a common DNA-binding domain, the T-box. T-box genes encode transcription factors involved in the regulation of developmental processes. Mutations in this gene have been associated with the inherited X-linked disorder, cleft palate with ankyloglossia (tongue-tie), and it is believed to play a major role in human palatogenesis. It has previously been mapped to the long arm of the X chromosome and it has now been demonstrated that mutations in the gene TBX22 are the cause of this syndrome. TBX22 mutations also result in non-syndromic cleft palate in some populations.

TBX22 is composed of seven exons spanning 8.7 kilobases of genomic DNA in Xq21.1. The TBX22 mRNA is 2099 base pairs long and encodes a 400-amino-acids protein containing a T-domain in its NH₂-terminal region which has the unique feature of missing 20 amino-acids relative to the other known T-domains.

Function

T-box genes are members of a family of transcriptional regulators that contain a region encoding a conserved DNA-binding motif of approximately 200 amino acids: the T-domain. These genes are grouped together on the basis of the homology existing between their products and the mouse Brachyury (or T) protein. In human and mouse, numerous T-domain-containing genes have been identified so far and mapped throughout the genome. The spatio-temporal expression of these genes is strictly regulated during the development of both vertebrates and invertebrates.

Functional studies have demonstrated that several T-box genes are involved in mesoderm specification in the developing embryo of mouse or Xenopus. In mice, the Brachyury gene is expressed in early mesoderm cells and its expression then becomes restricted to the notochord. The Brachyury protein binds as a dimer to a 20-nucleotide partially palindromic sequence recognized by its T-domain. More generally, T-box genes have been shown to be critical during development for proper morphogenesis and organogenesis. Abnormal expression of several T-box genes has been shown to cause developmental anomalies in mouse, Drosophila or zebrafish.

Clinical significance

TBX22 mutations in two families predicted to have X linked cleft palate and ankyloglossia. Sequence electropherograms from genomic DNA amplified from exon 5 (family K) and exon 4 (family W) are of affected (mutant) males and unaffected (control) females. *Represents the site of the sequence variant.

In humans, two T-box genes are involved in inherited disorders: mutations in TBX5 cause Holt–Oram syndrome, whereas mutations in TBX3 cause ulnar–mammary syndrome.

Mutations in TBX22 cause X-linked cleft palate and ankyloglossia. CPX has been described in a small number of families exhibiting a strong X linked Mendelian inheritance. The cleft phenotype predominantly affects males who show variation ranging from a complete cleft of the secondary palate, submucous cleft, or bifid uvula to high arched palate. Ankyloglossia is frequently seen in affected patients and carrier females, and has proved to be a useful indicator of CPX. Temporal and spatial studies using in situ hybridization in both human and mouse has shown that TBX22/Tbx22 is expressed primarily in the palatal shelves and tongue during palatogenesis, indicating a specific role of TBX22 in both palatal and tongue development. In addition to families with well defined X linked inheritance, TBX22 mutations have been identified in several families where pedigree size and/or family history were too limited to predict mode of inheritance. In these cases, ascertainment was largely based on the presence of ankyloglossia as well as cleft palate.

It has been demonstrated that TBX22 makes a significant contribution to the prevalence of cleft palate at least in the Brazilian and the North American cohorts. To date, 10 different TBX22 mutations have been reported in patients with CP and/or ankyloglossia. These include small deletions/insertions, nonsense, splice site, frameshift and missense alterations.

Further reading

• Laugier-Anfossi F, Villard L (2000). "Molecular characterization of a new human T-box gene (TBX22) located in xq21.1 encoding a protein containing a truncated T-domain". Gene. 255 (2): 289–96. doi:10.1016/S0378-1119(00)00326-7. PMID 11024289.
• Braybrook C, Doudney K, Marçano AC, et al. (2001). "The T-box transcription factor gene TBX22 is mutated in X-linked cleft palate and ankyloglossia". Nat. Genet. 29 (2): 179–83. doi:10.1038/ng730. PMID 11559848. S2CID 28939959.
• Aldred MA (2002). "Cleft lip and palate: new genetic clues". Trends in Molecular Medicine. 7 (12): 539–40. doi:10.1016/S1471-4914(01)02223-7. PMID 11733204.
• Braybrook C, Lisgo S, Doudney K, et al. (2003). "Craniofacial expression of human and murine TBX22 correlates with the cleft palate and ankyloglossia phenotype observed in CPX patients". Hum. Mol. Genet. 11 (22): 2793–804. doi:10.1093/hmg/11.22.2793. PMID 12374769.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
• Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
• Marçano AC, Doudney K, Braybrook C, et al. (2004). "TBX22 mutations are a frequent cause of cleft palate". J. Med. Genet. 41 (1): 68–74. doi:10.1136/jmg.2003.010868. PMC 1757272. PMID 14729838.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
• Ross MT, Grafham DV, Coffey AJ, et al. (2005). "The DNA sequence of the human X chromosome". Nature. 434 (7031): 325–37. Bibcode:2005Natur.434..325R. doi:10.1038/nature03440. PMC 2665286. PMID 15772651.
• Andreou AM, Pauws E, Jones MC, et al. (2007). "TBX22 missense mutations found in patients with X-linked cleft palate affect DNA binding, sumoylation, and transcriptional repression". Am. J. Hum. Genet. 81 (4): 700–12. doi:10.1086/521033. PMC 2227921. PMID 17846996.
• Suphapeetiporn K, Tongkobpetch S, Siriwan P, Shotelersuk V (2008). "TBX22 mutations are a frequent cause of non-syndromic cleft palate in the Thai population". Clin. Genet. 72 (5): 478–83. doi:10.1111/j.1399-0004.2007.00891.x. PMID 17868388. S2CID 2244618.

External links

• TBX22+protein,+human at the U.S. National Library of Medicine Medical Subject Headings (MeSH)
• WikiGenes TBX22
• TBX22 human gene location in the UCSC Genome Browser.
• TBX22 human gene details in the UCSC Genome Browser.