File:Protein KLHL7 PDB 3II7.png

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Description

Crystal structure of the kelch domain of human KLHL7, illustrated by Jmol Version 12.0.41

Date

10 May 2012

Source

http://www.pdb.org/pdb/explore/jmol.do?structureId=3II7&bionumber=1

Author

Chaikuad, A., Thangaratnarajah, C., Cooper, C.D.O., Ugochukwu, E., Muniz, J.R.C., Krojer, T., Sethi, R., Pike, A.C.W., Filippakopoulos, P., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Bountra, C., Knapp, S., Bullock, A.

Permission
(Reusing this file)

This screenshot either does not contain copyright-eligible parts or visuals of copyrighted software, or the author has released it under a free license (which should be indicated beneath this notice), and as such follows the licensing guidelines for screenshots of Wikimedia Commons. You may use it freely according to its particular license. Free software license:

This work is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or any later version. This work is distributed in the hope that it will be useful, but without any warranty; without even the implied warranty of merchantability or fitness for a particular purpose. See version 2 and version 3 of the GNU General Public License for more details.http://www.gnu.org/licenses/gpl.htmlGPLGNU General Public Licensetruetrue

Note: if the screenshot shows any work that is not a direct result of the program code itself, such as a text or graphics that are not part of the program, the license for that work must be indicated separately.

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File history

Click on a date/time to view the file as it appeared at that time.

	Date/Time	Thumbnail	Dimensions	User	Comment
current	10:55, 10 May 2012		1,200 × 776 (576 KB)	LJ TTY	{{Information \|Description=Crystal structure of the kelch domain of human KLHL7, illustrated by Jmol Version 12.0.41 \|Source=http://www.pdb.org/pdb/explore/jmol.do?structureId=3II7&bionumber=1 \|Date=2012-05-10 \|Author=Chaikuad, A., Thangaratnarajah, C...

File usage

The following page uses this file:

Kelch-like protein 7

Global file usage

The following other wikis use this file:

Usage on cy.wikipedia.org
- KLHL7
Usage on ru.wikipedia.org
- KLHL7
Usage on tt.wikipedia.org
- KLHL7
Usage on uk.wikipedia.org
- KLHL7
Usage on www.wikidata.org
- Q18042201

Metadata

This file contains additional information, probably added from the digital camera or scanner used to create or digitize it.

If the file has been modified from its original state, some details may not fully reflect the modified file.

PNG file comment

/****** Jmol Embedded Script ****

Jmol state version 12.0.41 2011-02-04 14:47;

 # fullName = &quot;jmolApplet0__678794401071338__&quot;;
 # documentBase = &quot;http://www.pdb.org/pdb/explore/jmol.do?structureId=3II7&amp;bionumber=1&quot;;
 # codeBase = &quot;http://www.pdb.org/pdb/Viewers/jmol-12.0.41/&quot;;

function _setWindowState() {

height 776;
width 1200;

 stateVersion = 1200041;
 background [xffffff];
 axis1Color = &quot;[xff0000]&quot;;
 axis2Color = &quot;[x008000]&quot;;
 axis3Color = &quot;[x0000ff]&quot;;
 set ambientPercent 45;
 set diffusePercent 84;
 set specular true;
 set specularPercent 22;
 set specularPower 40;
 set specularExponent 6;
 set zShadePower 1;
 statusReporting  = true;

}

function _setFileState() {

 set allowEmbeddedScripts false;
 set appendNew true;
 set appletProxy &quot;&quot;;
 set applySymmetryToBonds false;
 set autoBond true;
 set bondRadiusMilliAngstroms 150;
 set bondTolerance 0.45;
 set defaultLattice {0.0 0.0 0.0};
 set defaultLoadFilter &quot;&quot;;
 set defaultLoadScript &quot;&quot;;
 set defaultVDW Auto;
 set forceAutoBond false;
 #set defaultDirectory &quot;&quot;;
 #set loadFormat &quot;http://www.rcsb.org/pdb/files/%FILE.pdb.gz&quot;;
 #set smilesUrlFormat &quot;http://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&amp;get3d=True&quot;;
 #set edsUrlFormat &quot;http://eds.bmc.uu.se/eds/dfs/%LC13/%LCFILE/%LCFILE.omap&quot;;
 #set edsUrlCutoff &quot;load('http://eds.bmc.uu.se/eds/dfs/%LC13/%LCFILE/%LCFILE.sfdat').lines.find('MAP_SIGMA').split(' ')[2]&quot;;
 set legacyAutoBonding false;
 set minBondDistance 0.4;
 set minimizationCriterion  0.0010;
 set minimizationSteps  100;
 set pdbGetHeader false;
 set pdbSequential false;
 set percentVdwAtom 23;
 set smallMoleculeMaxAtoms 40000;
 set smartAromatic true;
 load /*file*/&quot;http://www1.rcsb.org/pdb/files/3II7.pdb1.gz&quot;;

}

function _setVariableState() {

  set defaultanglelabel &quot;%VALUE %UNITS&quot;;
  set defaultcolorscheme &quot;jmol&quot;;
  set defaultdistancelabel &quot;%VALUE %UNITS&quot;;
  set defaultdrawarrowscale 0.5;
  set defaultlattice &quot;{0 0 0}&quot;;
  set defaultloadfilter &quot;&quot;;
  set defaultloadscript &quot;&quot;;
  set defaulttorsionlabel &quot;%VALUE %UNITS&quot;;
  set defaulttranslucent 0.5;
  set defaultvdw &quot;Auto&quot;;
 set allowembeddedscripts true;
 set allowrotateselected false;
 set appletproxy &quot;&quot;;
 set applysymmetrytobonds false;
 set atompicking true;
 set atomtypes &quot;&quot;;
 set autobond true;
 set autofps false;
 set axes window;
 set axesmode 0;
 set axesscale 2.0;
 set bondmodeor false;
 set bondradiusmilliangstroms 150;
 set bondtolerance 0.45;
 set cartoonbaseedges false;
 set cartoonrockets false;
 set chaincasesensitive false;
 set dataseparator &quot;~~~&quot;;
 set defaultstructuredssp true;
 set delaymaximumms 0;
 set dipolescale 1.0;
 set disablepopupmenu false;
 set displaycellparameters true;
 set dotdensity 3;
 set dotscale 1;
 set dotsselectedonly false;
 set dotsurface true;
 set dragselected false;
 set drawhover false;
 set drawpicking false;
 set dsspcalculatehydrogenalways true;
 set dynamicmeasurements false;
 set ellipsoidarcs false;
 set ellipsoidaxes false;
 set ellipsoidaxisdiameter 0.02;
 set ellipsoidball true;
 set ellipsoiddotcount 200;
 set ellipsoiddots false;
 set ellipsoidfill false;
 set forceautobond false;
 set fractionalrelative false;
 set gestureswipefactor 1.0;
 set greyscalerendering false;
 set hbondsangleminimum 90.0;
 set hbondsbackbone false;
 set hbondsdistancemaximum 3.25;
 set hbondsrasmol true;
 set hbondssolid false;
 set helixstep 1;
 set helppath &quot;http://chemapps.stolaf.edu/jmol/docs/index.htm&quot;;
 set hermitelevel 0;
 set hidenameinpopup false;
 set hidenavigationpoint false;
 set highresolution false;
 set historylevel 0;
 set hoverdelay 0.5;
 set imagestate true;
 set iskiosk false;
 set isosurfacepropertysmoothing true;
 set justifymeasurements false;
 set loadatomdatatolerance 0.01;
 set measureallmodels false;
 set measurementlabels true;
 set messagestylechime false;
 set minbonddistance 0.4;
 set minimizationcriterion 0.0010;
 set minimizationrefresh true;
 set minimizationsilent false;
 set minimizationsteps 100;
 set monitorenergy false;
 set multiplebondradiusfactor 0.0;
 set multiplebondspacing -1.0;
 set navigatesurface false;
 set navigationperiodic false;
 set navigationspeed 5.0;
 set pdbgetheader false;
 set pdbsequential false;
 set percentvdwatom 23;
 set pickingspinrate 10;
 set picklabel &quot;&quot;;
 set pointgroupdistancetolerance 0.2;
 set pointgrouplineartolerance 8.0;
 set propertyatomnumbercolumncount 0;
 set propertyatomnumberfield 0;
 set propertycolorscheme &quot;roygb&quot;;
 set propertydatacolumncount 0;
 set propertydatafield 0;
 set quaternionframe &quot;p&quot;;
 set rangeselected false;
 set ribbonaspectratio 16;
 set ribbonborder false;
 set rocketbarrels false;
 set saveproteinstructurestate true;
 set selectallmodels true;
 set selecthetero true;
 set selecthydrogen true;
 set sheetsmoothing 1.0;
 set showhiddenselectionhalos false;
 set showhydrogens true;
 set showkeystrokes true;
 set showmeasurements true;
 set showmultiplebonds true;
 set shownavigationpointalways false;
 set slabbyatom false;
 set slabbymolecule false;
 set smallmoleculemaxatoms 40000;
 set smartaromatic true;
 set solventprobe false;
 set solventproberadius 1.2;
 set ssbondsbackbone true;
 set stereodegrees -5;
 set strandcountformeshribbon 7;
 set strandcountforstrands 5;
 set strutdefaultradius 0.3;
 set strutlengthmaximum 7.0;
 set strutsmultiple false;
 set strutspacing 6;
 set testflag1 false;
 set testflag2 false;
 set testflag3 false;
 set testflag4 false;
 set tracealpha true;
 set usearcball false;
 set useminimizationthread true;
 set usenumberlocalization true;
 set vectorscale 1.0;
 set vibrationscale 1.0;
 set wireframerotation false;
 set zoomlarge true;

label defaults;

 select none;
 color label none;
 background label none;
 set labelOffset 4 4;
 set labelAlignment left;
 set labelPointer off;
 font label 13.0 SansSerif Plain;

}

function _setModelState() { data "connect_atoms" 35 2285 4096 0.0 -2.626 hbond; 46 164 4096 0.0 -2.79 hbond; 54 2272 4096 0.0 -3.04 hbond; 59 141 4096 0.0 -3.04 hbond; 67 2256 4096 0.0 -3.065 hbond; 78 127 4096 0.0 -0.526 hbond; 123 96 8192 0.0 -1.867 hbond; 138 62 4096 0.0 -2.418 hbond; 149 239 4096 0.0 -3.07 hbond; 161 49 4096 0.0 -3.407 hbond; 172 219 4096 0.0 -2.71 hbond; 196 175 8192 0.0 -0.699 hbond; 204 175 10240 0.0 -1.516 hbond; 216 175 12288 0.0 -0.837 hbond; 236 152 4096 0.0 -2.822 hbond; 251 135 4096 0.0 -2.645 hbond; 323 464 4096 0.0 -3.092 hbond; 347 447 4096 0.0 -2.598 hbond; 358 427 4096 0.0 -2.098 hbond; 380 413 14336 0.0 -2.959 hbond; 410 383 8192 0.0 -1.244 hbond; 417 557 4096 0.0 -3.011 hbond; 424 362 4096 0.0 -3.297 hbond; 436 543 4096 0.0 -3.104 hbond; 444 350 4096 0.0 -2.716 hbond; 456 695 4096 0.0 -2.634 hbond; 460 326 4096 0.0 -2.011 hbond; 469 489 4096 0.0 -2.433 hbond; 504 459 4096 0.0 -2.603 hbond; 532 646 4096 0.0 -2.835 hbond; 540 439 4096 0.0 -2.234 hbond; 548 628 4096 0.0 -2.923 hbond; 554 420 4096 0.0 -3.16 hbond; 566 608 4096 0.0 -2.748 hbond; 574 405 4096 0.0 -3.012 hbond; 597 569 10240 0.0 -1.004 hbond; 605 569 12288 0.0 -1.579 hbond; 625 551 4096 0.0 -3.003 hbond; 643 535 4096 0.0 -2.736 hbond; 660 515 4096 0.0 -2.959 hbond; 703 817 4096 0.0 -2.963 hbond; 711 337 4096 0.0 -2.838 hbond; 725 803 4096 0.0 -2.503 hbond; 735 784 4096 0.0 -1.951 hbond; 746 767 14336 0.0 -2.507 hbond; 764 749 8192 0.0 -1.619 hbond; 773 925 4096 0.0 -3.147 hbond; 781 738 4096 0.0 -2.815 hbond; 793 910 4096 0.0 -2.291 hbond; 800 728 4096 0.0 -2.734 hbond; 806 891 4096 0.0 -2.751 hbond; 810 1070 4096 0.0 -2.612 hbond; 814 706 4096 0.0 -2.739 hbond; 820 843 14336 0.0 -0.59 hbond; 840 823 8192 0.0 -1.058 hbond; 859 813 4096 0.0 -2.097 hbond; 907 796 4096 0.0 -2.513 hbond; 916 999 4096 0.0 -3.199 hbond; 922 776 4096 0.0 -2.907 hbond; 934 979 4096 0.0 -3.161 hbond; 942 763 4096 0.0 -2.41 hbond; 967 937 10240 0.0 -1.637 hbond; 976 937 12288 0.0 -1.139 hbond; 996 919 4096 0.0 -2.489 hbond; 1013 899 4096 0.0 -2.63 hbond; 1035 871 4096 0.0 -2.494 hbond; 1067 862 4096 0.0 -2.158 hbond; 1078 1204 4096 0.0 -2.403 hbond; 1087 714 4096 0.0 -2.578 hbond; 1103 1190 4096 0.0 -2.106 hbond; 1115 1167 4096 0.0 -2.756 hbond; 1131 1151 14336 0.0 -2.973 hbond; 1148 1134 8192 0.0 -1.67 hbond; 1156 1322 4096 0.0 -2.526 hbond; 1164 1118 4096 0.0 -3.004 hbond; 1176 1306 4096 0.0 -2.982 hbond; 1187 1106 4096 0.0 -1.868 hbond; 1193 1294 4096 0.0 -2.576 hbond; 1197 1458 4096 0.0 -2.775 hbond; 1201 1082 4096 0.0 -3.006 hbond; 1207 1255 4096 0.0 -2.458 hbond; 1248 1222 10240 0.0 -1.009 hbond; 1252 1210 4096 0.0 -2.581 hbond; 1270 1200 4096 0.0 -3.168 hbond; 1303 1180 4096 0.0 -2.422 hbond; 1312 1391 4096 0.0 -2.633 hbond; 1319 1159 4096 0.0 -3.153 hbond; 1331 1370 4096 0.0 -2.03 hbond; 1351 1334 8192 0.0 -0.8 hbond; 1358 1334 10240 0.0 -1.675 hbond; 1367 1334 12288 0.0 -1.035 hbond; 1388 1315 4096 0.0 -2.939 hbond; 1404 1300 4096 0.0 -2.499 hbond; 1425 1282 4096 0.0 -2.956 hbond; 1455 1273 4096 0.0 -2.065 hbond; 1466 1604 4096 0.0 -2.631 hbond; 1475 1090 4096 0.0 -2.48 hbond; 1493 1589 4096 0.0 -2.647 hbond; 1505 1573 4096 0.0 -2.223 hbond; 1523 1551 14336 0.0 -2.733 hbond; 1539 1526 6144 0.0 -2.044 hbond; 1547 1526 8192 0.0 -0.884 hbond; 1562 1693 4096 0.0 -1.995 hbond; 1570 1508 4096 0.0 -2.981 hbond; 1581 1672 4096 0.0 -2.913 hbond; 1586 1496 4096 0.0 -2.509 hbond; 1593 1657 4096 0.0 -1.916 hbond; 1601 1469 4096 0.0 -2.213 hbond; 1610 1633 14336 0.0 -3.195 hbond; 1630 1613 8192 0.0 -1.224 hbond; 1638 1600 4096 0.0 -1.808 hbond; 1638 1844 4096 0.0 -1.786 hbond; 1669 1584 4096 0.0 -2.437 hbond; 1678 1769 4096 0.0 -3.044 hbond; 1690 1565 4096 0.0 -3.001 hbond; 1702 1746 4096 0.0 -3.078 hbond; 1710 1542 4096 0.0 -1.2 hbond; 1710 1693 6144 0.0 -0.916 hbond; 1735 1705 10240 0.0 -1.624 hbond; 1743 1705 12288 0.0 -1.221 hbond; 1766 1681 4096 0.0 -2.578 hbond; 1783 1665 4096 0.0 -2.476 hbond; 1803 1649 4096 0.0 -2.524 hbond; 1845 1978 4096 0.0 -2.518 hbond; 1852 1978 4096 0.0 -1.932 hbond; 1859 1478 4096 0.0 -2.107 hbond; 1870 1969 4096 0.0 -2.609 hbond; 1894 1942 4096 0.0 -2.524 hbond; 1904 1927 14336 0.0 -2.316 hbond; 1924 1907 8192 0.0 -1.654 hbond; 1932 2082 4096 0.0 -2.894 hbond; 1939 1897 4096 0.0 -2.803 hbond; 1951 2065 4096 0.0 -2.693 hbond; 1958 1874 4096 0.0 -2.607 hbond; 1966 1874 4096 0.0 -1.337 hbond; 1986 2019 14336 0.0 -2.792 hbond; 2032 1974 4096 0.0 -3.067 hbond; 2054 2189 4096 0.0 -2.58 hbond; 2062 1954 4096 0.0 -2.432 hbond; 2070 2154 4096 0.0 -2.94 hbond; 2079 1935 4096 0.0 -2.984 hbond; 2091 2133 4096 0.0 -2.852 hbond; 2099 1919 4096 0.0 -2.144 hbond; 2122 2094 10240 0.0 -1.466 hbond; 2130 2094 12288 0.0 -1.315 hbond; 2151 2073 4096 0.0 -2.669 hbond; 2163 2057 4096 0.0 -3.114 hbond; 2171 2161 6144 0.0 -0.967 hbond; 2186 2166 8192 0.0 -1.421 hbond; 2204 2043 4096 0.0 -2.066 hbond; 2209 1961 4096 0.0 -3.065 hbond; 2234 2223 6144 0.0 -1.016 hbond; 2247 2230 8192 0.0 -1.086 hbond; 2253 70 4096 0.0 -2.787 hbond; 2269 57 4096 0.0 -2.106 hbond; 2282 38 4096 0.0 -3.055 hbond; 2297 18 4096 0.0 -2.373 hbond; end "connect_atoms";

 select ({0:2309 2410:2747});
 color atoms opaque structure;
 select ({2310:2409});
 Spacefill 0.5;
 select ({0:2309 2410:2747});
 Spacefill 0.0;
 select BONDS ({2383:2457});
 wireframe 0.16;
 select BONDS ({2458:2614});
 color bonds opaque [xff00ff];
 select BONDS ({0:2382 2458:2614});
 wireframe 0.0;

 measures delete;
 select *; set measures angstroms;
 font measures 15.0 SansSerif Plain;

 select ({0:2309});
 Cartoon on;
 color Cartoon opaque structure;

 boundBox off;
 font boundBox 14.0 SansSerif Plain;
 boundBox off;

 unitcell off;
 font unitcell 14.0 SansSerif Plain;
 unitcell off;

 hover &quot;%U&quot;;

 frank on;
 font frank 16.0 SansSerif Bold;
 select *;

}

function _setPerspectiveState() {

 set perspectiveModel 11;
 set scaleAngstromsPerInch 0.0;
 set perspectiveDepth true;
 set visualRange 5.0;
 set cameraDepth 3.0;
 boundbox corners {-6.2770004 -11.601002 -6.4210014} {47.374 37.259 40.634} # volume = 123349.414;
 center {20.5485 12.828999 17.106499};
 moveto -1.0 {0 0 1 0} 100.0 0.0 0.0 {20.5485 12.828999 17.106499} 33.47283 {0.0 0.0 0.0} 0.0 0.0 0.0;
 save orientation &quot;default&quot;;
 moveto 0.0 { 810 -577 -106 112.82} 87.06 0.0 0.0 {20.5485 12.828999 17.106499} 33.47283 {0.0 0.0 0.0} 9.258357 -49.300667 0.0;;
 slab 100;depth 0;
 set spinX 0; set spinY 30; set spinZ 0; set spinFps 30;  set navX 0; set navY 0; set navZ 0; set navFps 10;

}

function _setSelectionState() {

 set hideNotSelected false;

}

function _setState() {

 initialize;
 set refreshing false;
 _setWindowState;
 _setFileState;
 _setVariableState;
 _setModelState;
 _setPerspectiveState;
 _setSelectionState;
 set refreshing true;
 set antialiasDisplay true;
 set antialiasTranslucent true;
 set antialiasImages true;

}

_setState;

- /

Horizontal resolution

37.8 dpc

Vertical resolution

37.8 dpc

File:Protein KLHL7 PDB 3II7.png

Captions

Items portrayed in this file

depicts

copyright status

copyrighted

copyright license

GNU General Public License, version 2.0 or later

inception

10 May 2012

File history

File usage

Global file usage

Metadata