An obelisk is a "viroid-like element" of a type first described in a January 2024 preprint, whose authors say that "Obelisks form their own distinct phylogenetic group",[1][2][3] as their RNA sequences, discovered by computer-aided metatranscriptomics, are not homologous with the genomic sequence of any other life form.[1] Currently, only a few methods are available for the identification of these elements from NGS data.[4]
With their relationship to other organisms being unknown, they are an example of the incertae sedis, or "enigmatic taxa".
Distribution and pathology
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Obelisks have been found in human stool samples, and inside specimens of Streptococcus sanguinis, a species of bacteria, taken from human mouths. Some human subjects harboured obelisks for more than 300 days. The initial study showed the presence of obelisks in about 7 percent of the stool samples, and about 50 percent of saliva samples, from individuals living on all continents.[1]
The effect of obelisks on human health, if any, is yet to be determined,[2] as are issues such as their life cycles, and what factors their replication depend on.[1]
Genetics and biochemistry
editFeatures of obelisks include circular RNA genome assemblies with around 1000 base pairs, and rod-like secondary structures that encompass the entire genome. In contrast to viroids, their RNA is translated into proteins, tentatively called "oblins" in the preprint. The two proteins listed there have been named Oblin-1 and Oblin-2.[1]
First structural predictions say that Oblin-1 can bind metal ions and thus could be involved in cellular signalling. Oblin-2 features a binding site which is typical of protein complexes, and might therefore bind to enzymes of its host cell.[2]
Name
editThe preprint says: "Owing to a strong predicted rod-like secondary structure, we term this group of RNAs Obelisk-alpha."... "At 1164 nt in length, the rod-like secondary structure was striking..."[1] (Secondary with respect to the circular assembly structure.)
References
edit- ^ a b c d e f Ivan N. Zheludev; Robert C. Edgar; Maria Jose Lopez-Galiano; Marcos de la Peña; Artem Babaian; Ami S. Bhatt; Andrew Z. Fire (21 January 2024). "Viroid-like colonists of human microbiomes". bioRxiv. doi:10.1101/2024.01.20.576352. PMC 10827157. PMID 38293115. Wikidata Q124389714.
- ^ a b c Sidik, Saima (29 January 2024). "'Wildly weird' RNA bits discovered infesting the microbes in our guts". Nature. doi:10.1038/d41586-024-00266-7. PMID 38291328. S2CID 267332809. Archived from the original on 30 January 2024. Retrieved 31 January 2024.
- ^ Pennisi, Elizabeth (26 January 2024). "'It's insane': New viruslike entities found in human gut microbes". Science. doi:10.1126/science.znxt3dk. Archived from the original on 30 January 2024. Retrieved 31 January 2024.
- ^ Kremer, Frederico; de Barros, Daniele (2024). "Tormentor: An obelisk prediction and annotation pipeline". BioRxiv.org. BioRxiv. doi:10.1101/2024.05.30.596730. Retrieved 3 June 2024.