Small nuclear ribonucleoprotein D1

Small nuclear ribonucleoprotein Sm D1 is a protein that in humans is encoded by the SNRPD1 gene.

SNRPD1
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 1B34, 3CW1, 3PGW, 3S6N, 4F7U, 4PJO, 4V98, 4WZJ, 3JCR
Identifiers
Aliases	SNRPD1, HsT2456, SMD1, SNRPD, Sm-D1, Small nuclear ribonucleoprotein D1, small nuclear ribonucleoprotein D1 polypeptide
External IDs	OMIM: 601063; MGI: 98344; HomoloGene: 107532; GeneCards: SNRPD1; OMA:SNRPD1 - orthologs
Gene location (Human) Chr. Chromosome 18 (human) Band 18q11.2 Start 21,612,314 bp End 21,633,524 bp
Gene location (Mouse) Chr. Chromosome 18 (mouse) Band 18|18 A1 Start 10,617,775 bp End 10,642,079 bp
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in ganglionic eminence ventricular zone oocyte mucosa of sigmoid colon mucosa of pharynx oral cavity mucosa of transverse colon olfactory zone of nasal mucosa islet of Langerhans appendix Top expressed in somite epiblast mandibular prominence maxillary prominence embryo abdominal wall embryo medial ganglionic eminence ventricular zone hand More reference expression data BioGPS More reference expression data
Gene ontology Molecular function protein binding U1 snRNP binding RNA binding Cellular component cytoplasm SMN-Sm protein complex cytosol prespliceosome catalytic step 2 spliceosome spliceosomal tri-snRNP complex U5 snRNP U12-type spliceosomal complex U2 snRNP nucleoplasm methylosome precatalytic spliceosome small nuclear ribonucleoprotein complex pICln-Sm protein complex spliceosomal complex commitment complex U4 snRNP nucleus U1 snRNP U4/U6 x U5 tri-snRNP complex U2-type precatalytic spliceosome U2-type catalytic step 2 spliceosome Biological process mRNA splicing, via spliceosome RNA processing mRNA processing spliceosomal complex assembly RNA splicing import into nucleus spliceosomal snRNP assembly Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 6632 20641 Ensembl ENSG00000167088 ENSMUSG00000002477 UniProt P62314 P62315 RefSeq (mRNA) NM_006938 NM_001291916 NM_009226 RefSeq (protein) NP_001278845 NP_008869 NP_033252 Location (UCSC) Chr 18: 21.61 – 21.63 Mb Chr 18: 10.62 – 10.64 Mb PubMed search
Wikidata
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Function

This gene encodes a small nuclear ribonucleoprotein that belongs to the SNRNP core protein family. The protein may act as a charged protein scaffold to promote SNRNP assembly or strengthen SNRNP-SNRNP interactions through nonspecific electrostatic contacts with RNA.

Interactions

Small nuclear ribonucleoprotein D1 has been shown to interact with:

• CDC5L,
• CLNS1A,
• DDX20,
• SMN1, and
• Small nuclear ribonucleoprotein D2

Further reading

• Renz M, Heim C, Bräunling O, Czichos A, Wieland C, Seelig HP (Sep 1989). "Expression of the major human ribonucleoprotein (RNP) autoantigens in Escherichia coli and their use in an EIA for screening sera from patients with autoimmune diseases". Clinical Chemistry. 35 (9): 1861–3. doi:10.1093/clinchem/35.9.1861. PMID 2528429.
• Rokeach LA, Haselby JA, Hoch SO (Jul 1988). "Molecular cloning of a cDNA encoding the human Sm-D autoantigen". Proceedings of the National Academy of Sciences of the United States of America. 85 (13): 4832–6. Bibcode:1988PNAS...85.4832R. doi:10.1073/pnas.85.13.4832. PMC 280530. PMID 3260384.
• Sun D, Ou YC, Hoch SO (Apr 1997). "Analysis of genes for human snRNP Sm-D1 protein and identification of the promoter sequence which shows segmental homology to the promoters of Sm-E and U1 snRNA genes". Gene. 189 (2): 245–54. doi:10.1016/S0378-1119(96)00858-X. PMID 9168134.
• Liu Q, Fischer U, Wang F, Dreyfuss G (Sep 1997). "The spinal muscular atrophy disease gene product, SMN, and its associated protein SIP1 are in a complex with spliceosomal snRNP proteins". Cell. 90 (6): 1013–21. doi:10.1016/S0092-8674(00)80367-0. PMID 9323129. S2CID 10855404.
• Fury MG, Zhang W, Christodoulopoulos I, Zieve GW (Nov 1997). "Multiple protein: protein interactions between the snRNP common core proteins". Experimental Cell Research. 237 (1): 63–9. doi:10.1006/excr.1997.3750. PMID 9417867.
• Kambach C, Walke S, Young R, Avis JM, de la Fortelle E, Raker VA, Lührmann R, Li J, Nagai K (Feb 1999). "Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs". Cell. 96 (3): 375–87. doi:10.1016/S0092-8674(00)80550-4. PMID 10025403. S2CID 17379935.
• Charroux B, Pellizzoni L, Perkinson RA, Shevchenko A, Mann M, Dreyfuss G (Dec 1999). "Gemin3: A novel DEAD box protein that interacts with SMN, the spinal muscular atrophy gene product, and is a component of gems". The Journal of Cell Biology. 147 (6): 1181–94. doi:10.1083/jcb.147.6.1181. PMC 2168095. PMID 10601333.
• Charroux B, Pellizzoni L, Perkinson RA, Yong J, Shevchenko A, Mann M, Dreyfuss G (Mar 2000). "Gemin4. A novel component of the SMN complex that is found in both gems and nucleoli". The Journal of Cell Biology. 148 (6): 1177–86. doi:10.1083/jcb.148.6.1177. PMC 2174312. PMID 10725331.
• Mammoto A, Sasaki T, Kim Y, Takai Y (May 2000). "Physical and functional interaction of rabphilin-11 with mammalian Sec13 protein. Implication in vesicle trafficking". The Journal of Biological Chemistry. 275 (18): 13167–70. doi:10.1074/jbc.C000096200. PMID 10747849.
• Brahms H, Raymackers J, Union A, de Keyser F, Meheus L, Lührmann R (Jun 2000). "The C-terminal RG dipeptide repeats of the spliceosomal Sm proteins D1 and D3 contain symmetrical dimethylarginines, which form a major B-cell epitope for anti-Sm autoantibodies". The Journal of Biological Chemistry. 275 (22): 17122–9. doi:10.1074/jbc.M000300200. hdl:11858/00-001M-0000-0012-F7F0-E. PMID 10747894.
• Meister G, Bühler D, Laggerbauer B, Zobawa M, Lottspeich F, Fischer U (Aug 2000). "Characterization of a nuclear 20S complex containing the survival of motor neurons (SMN) protein and a specific subset of spliceosomal Sm proteins". Human Molecular Genetics. 9 (13): 1977–86. doi:10.1093/hmg/9.13.1977. PMID 10942426.
• Ajuh P, Kuster B, Panov K, Zomerdijk JC, Mann M, Lamond AI (Dec 2000). "Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry". The EMBO Journal. 19 (23): 6569–81. doi:10.1093/emboj/19.23.6569. PMC 305846. PMID 11101529.
• Selenko P, Sprangers R, Stier G, Bühler D, Fischer U, Sattler M (Jan 2001). "SMN tudor domain structure and its interaction with the Sm proteins". Nature Structural Biology. 8 (1): 27–31. doi:10.1038/83014. PMID 11135666. S2CID 27071310.
• Urlaub H, Raker VA, Kostka S, Lührmann R (Jan 2001). "Sm protein-Sm site RNA interactions within the inner ring of the spliceosomal snRNP core structure". The EMBO Journal. 20 (1–2): 187–96. doi:10.1093/emboj/20.1.187. PMC 140196. PMID 11226169.
• Friesen WJ, Massenet S, Paushkin S, Wyce A, Dreyfuss G (May 2001). "SMN, the product of the spinal muscular atrophy gene, binds preferentially to dimethylarginine-containing protein targets". Molecular Cell. 7 (5): 1111–7. doi:10.1016/S1097-2765(01)00244-1. PMID 11389857.
• Park JW, Voss PG, Grabski S, Wang JL, Patterson RJ (Sep 2001). "Association of galectin-1 and galectin-3 with Gemin4 in complexes containing the SMN protein". Nucleic Acids Research. 29 (17): 3595–602. doi:10.1093/nar/29.17.3595. PMC 55878. PMID 11522829.
• Friesen WJ, Paushkin S, Wyce A, Massenet S, Pesiridis GS, Van Duyne G, Rappsilber J, Mann M, Dreyfuss G (Dec 2001). "The methylosome, a 20S complex containing JBP1 and pICln, produces dimethylarginine-modified Sm proteins". Molecular and Cellular Biology. 21 (24): 8289–300. doi:10.1128/MCB.21.24.8289-8300.2001. PMC 99994. PMID 11713266.
• Gubitz AK, Mourelatos Z, Abel L, Rappsilber J, Mann M, Dreyfuss G (Feb 2002). "Gemin5, a novel WD repeat protein component of the SMN complex that binds Sm proteins". The Journal of Biological Chemistry. 277 (7): 5631–6. doi:10.1074/jbc.M109448200. PMID 11714716.