Biochemical and Organic Simulation System (BOSS) is a general-purpose molecular modeling program that performs molecular mechanics calculations, Metropolis Monte Carlo statistical mechanics simulations, and semiempirical Austin Model 1 (AM1), PM3, and PDDG/PM3 quantum mechanics calculations.[1] The molecular mechanics calculations cover energy minimizations, normal mode analysis and conformational searching with the Optimized Potentials for Liquid Simulations (OPLS) force fields. BOSS is developed by Prof. William L. Jorgensen at Yale University, and distributed commercially by Cemcomco, LLC and Schrödinger, Inc.
| Original author(s) | William L. Jorgensen |
|---|---|
| Developer(s) | Jorgensen Research Group, Yale University |
| Initial release | 1987 |
| Stable release | 4.9
/ January 2013 |
| Written in | Fortran |
| Operating system | Unix, Linux, Windows |
| Platform | x86, x86-64 |
| Available in | English |
| Type | Molecular modelling |
| License | Proprietary |
| Website | zarbi |
This article relies largely or entirely on a single source. (February 2024) |
Key features
edit- OPLS force field inventor
- Geometry optimization
- Semiempirical quantum chemistry
- MC simulations for pure liquids, solutions, clusters or gas-phase systems
- Free energies are computed from statistical perturbation (free energy perturbation (FEP)) theory
- TIP3P, TIP4P, and TIP5P water models
See also
edit- Molecular modelling
- Molecular graphics
- Molecule editor
- Molecular design software
- List of software for Monte Carlo molecular modeling
- List of molecular graphics systems
- Comparison of software for molecular mechanics modeling
- Abalone (molecular mechanics)
- AMBER
- Ascalaph Designer
- CHARMM
- GROMACS
- MDynaMix
- NAMD
- Tinker (software)
References
edit- ^ Jorgensen, W.L.; Tirado-Rives, J. (2005). "Molecular modeling of organic and biomolecular systems using BOSS and MCPRO". J. Comput. Chem. 26 (16): 1689–1700. doi:10.1002/jcc.20297. PMID 16200637.