ChimerDB in computational biology is a database of fusion sequences.[1]
 | |
| Content | |
|---|---|
| Description | fusion sequences. |
| Contact | |
| Research center | Ewha Womans University, Seoul 120-750, Korea. |
| Laboratory | Division of Molecular Life Sciences |
| Authors | Namshin Kim |
| Primary citation | Kim & al. (2006)[1] |
| Access | |
| Website | http://genome.ewha.ac.kr/ChimerDB/ |
ChimerDB currently consists of three searchable datasets.[2]
- ChimerKB is a curated knowledge base of 1,066 fusion genes sourced from publicly available scientific literature.
- ChimerPub provides continuously updated descriptions on fusion genes text mined from publications.
- ChimerSeq is a database of RNA-seq data of fusion sequences downloaded from the TCGA data portal.
See also
editReferences
edit- ^ a b Kim, Namshin; Kim Pora; Nam Seungyoon; Shin Seokmin; Lee Sanghyuk (Jan 2006). "ChimerDB--a knowledgebase for fusion sequences". Nucleic Acids Res. 34 (Database issue): D21–4. doi:10.1093/nar/gkj019. PMC 1347382. PMID 16381848.
- ^ Lee, Myunggyo; Lee, Kyubum; Yu, Namhee; Jang, Insu; Choi, Ikjung; Kim, Pora; Jang, Ye Eun; Kim, Byounggun; Kim, Sunkyu (2017-01-04). "ChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data mining". Nucleic Acids Research. 45 (Database issue): D784–D789. doi:10.1093/nar/gkw1083. ISSN 0305-1048. PMC 5210563. PMID 27899563.
External links
edit- http://203.255.191.229:8080/chimerdbv31/mindex.cdb Archived 2017-11-07 at the Wayback Machine
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