Wikipedia

Desulfosporosinus

Desulfosporosinus is a genus of strictly anaerobic, sulfate-reducing bacteria, often found in soil.

Desulfosporosinus
Scientific classification
Domain:
Bacteria
Phylum:
Bacillota
Class:
Clostridia
Order:
Clostridiales
Family:
Desulfitobacteriaceae
Genus:
Desulfosporosinus

Stackebrandt et al. 1997[1][2]
Type species
Desulfosporosinus orientis
(Adams & Postgate 1959) Stackebrandt et al. 1997
Species

See text.

The type species D. orientis was isolated in 1959[3] with the proposed name Desulfovibrio orientis, and was later assigned to the genus Desulfotomaculum.[4] Based on 16S rRNA gene sequence data Desulfotomaculum orientis was reclassified as Desulfosporosinus orientis in 1997.[1]

Species

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Species Type strain Isolated from Notes References
D. acididurans M1 (DSM 27692) Acidic sediment moderately acidophilic [5]
D. acidiphilus SJ4 (DSM 22704) Acid mine drainage sediment moderately acidophilic [6]
D. auripigmenti OREX-4 (DSM 13351) Freshwater sediment ([7]) [8]
D. burensis BSREI1 (DSM 24089) Borehole [9]
D. fructosivorans 63.6F (DSM140297) Marine subsurface sediment [10]
D. hippei 343 (DSM 8344) Permafrost soil [2]
D. lacus STP12 (DSM 15449) Freshwater sediment [11]
D. meridiei S10 (DSM 13257) Gasolene-contaminated groundwater [12]
D. nitroreducens 59.4B (DSM 140295) Marine subsurface sediment [13]
D. orientis Singapore I (DSM 765) Soil ([3][4]) [1]
D. youngiae JW/YJL-B18 (DSM 17734) Constructed wetland / acid mine drainage sediment [14]

Genomes

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Five complete Desulfosporosinus genomes are available, and another two genomes are in the progress of being sequenced.

Strain Status Year Accession number References
D. acididurans M1 Published draft 2015 LDZY00000000 [15]
D. acidiphilus SJ4 Complete and published 2012 CP003639 [16]
D. meridiei S10 Complete and published 2012 CP003629 [16]
D. orientis Singapore I Complete and published 2011 CP003108 [16]
D. sp. OT Complete and published 2011 AGAF00000000 [17]
D. youngiae JW/YJL-B18 Complete and published 2011 CM001441 [16]

Phylogeny

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The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[18] and National Center for Biotechnology Information (NCBI)[19]

16S rRNA based LTP_08_2023[20][21][22] 120 marker proteins based GTDB 08-RS214[23][24][25]
Desulfosporosinus

D. orientis (Adams & Postgate 1959) Stackebrandt et al. 1997

D. metallidurans Panova et al. 2021

D. acididurans Sanchez-Andrea et al. 2015

D. acidiphilus Alazard et al. 2012

D. youngiae Lee, Romanek & Wiegel 2009

D. auripigmenti corrig. (Newman et al. 2000) Stackebrandt et al. 2003

D. hippei Vatsurina et al. 2008

D. meridiei Robertson et al. 2001

D. fructosivorans Vandieken et al. 2017

D. lacus Ramamoorthy et al. 2006

D. burensis Mayeux et al. 2013

D. nitroreducens Vandieken et al. 2017

Desulfosporosinus

D. acididurans

D. acidiphilus

D. metallidurans

D. fructosivorans

"Ca. D. infrequens" Hausmann et al. 2019

D. orientis

D. youngiae

D. lacus

D. nitroreducens

D. hippei

D. meridiei

See also

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References

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  1. ^ a b c Stackebrandt, E; C Sproer; F A Rainey; J Burghardt; O Päuker; H Hippe (1997). "Phylogenetic analysis of the genus Desulfotomaculum: evidence for the misclassification of Desulfotomaculum guttoideum and description of Desulfotomaculum orientis as Desulfosporosinus orientis gen. nov., comb. nov". International Journal of Systematic Bacteriology. 47 (4): 1134–1139. doi:10.1099/00207713-47-4-1134. PMID 9336920.
  2. ^ a b Vatsurina, A; D Badrutdinova; P Schumann; S Spring; M Vainshtein (2008). "Desulfosporosinus hippei sp. nov., a mesophilic sulfate-reducing bacterium isolated from permafrost". International Journal of Systematic and Evolutionary Microbiology. 58 (5): 1228–1232. doi:10.1099/ijs.0.65368-0. PMID 18450718.
  3. ^ a b Adams, Mary E; J R Postgate (1959). "A new sulphate-reducing vibrio". Journal of General Microbiology. 20 (2): 252–257. doi:10.1099/00221287-20-2-252. PMID 13654719.
  4. ^ a b Campbell, L L; J R Postgate (1965). "Classification of the spore-forming sulfate-reducing bacteria". Bacteriological Reviews. 29 (3): 359–363. doi:10.1128/br.29.3.359-363.1965. PMC 441283. PMID 5826606. S2CID 237235010.
  5. ^ Sánchez-Andrea, Irene; Alfons J. M. Stams; Sabrina Hedrich; Ivan Ňancucheo; D. Barrie Johnson (2014). "Desulfosporosinus acididurans sp. nov.: an acidophilic sulfate-reducing bacterium isolated from acidic sediments". Extremophiles: Life Under Extreme Conditions. 19 (1): 39–47. doi:10.1007/s00792-014-0701-6. PMID 25370366. S2CID 5158675.
  6. ^ Alazard, Didier; Manon Joseph; Fabienne Battaglia-Brunet; Jean-Luc Cayol; Bernard Ollivier (2010). "Desulfosporosinus acidiphilus sp. nov.: a moderately acidophilic sulfate-reducing bacterium isolated from acid mining drainage sediments". Extremophiles: Life Under Extreme Conditions. 14 (3): 305–312. doi:10.1007/s00792-010-0309-4. PMID 20358236. S2CID 25655510.
  7. ^ Newman, Dianne K.; Erin K. Kennedy; John D. Coates; Dianne Ahmann; Debra J. Ellis; Derek R. Lovley; François M. M. Morel (1997). "Dissimilatory arsenate and sulfate reduction in Desulfotomaculum auripigmentum sp. nov". Archives of Microbiology. 168 (5): 380–388. doi:10.1007/s002030050512. PMID 9325426. S2CID 2354562.
  8. ^ Stackebrandt, Erko; Peter Schumann; Esther Schüler; Hans Hippe (2003). "Reclassification of Desulfotomaculum auripigmentum as Desulfosporosinus auripigmenti corrig., comb. nov". International Journal of Systematic and Evolutionary Microbiology. 53 (5): 1439–1443. doi:10.1099/ijs.0.02526-0. PMID 13130030.
  9. ^ Mayeux, Bruno; Marie-Laure Fardeau; Manon Bartoli-Joseph; Laurie Casalot; Agnès Vinsot; Marc Labat (2012). "Desulfosporosinus burensis sp. nov.: a spore-forming, mesophilic, sulfate-reducing bacterium isolated from a deep clay environment". International Journal of Systematic and Evolutionary Microbiology. 63 (Pt 2): 593–598. doi:10.1099/ijs.0.035238-0. PMID 22544786.
  10. ^ Vandieken, Verona; Niemann, Helge; Engelen, Bert; Cypionka, HeribertYR 2017 (2017). "Marinisporobacter balticus gen. nov., sp. nov., Desulfosporosinus nitroreducens sp. nov. and Desulfosporosinus fructosivorans sp. nov., new spore-forming bacteria isolated from subsurface sediments of the Baltic Sea". International Journal of Systematic and Evolutionary Microbiology. 67 (6): 1887–1893. doi:10.1099/ijsem.0.001883. ISSN 1466-5034. PMID 28646634.{{cite journal}}: CS1 maint: numeric names: authors list (link)
  11. ^ Ramamoorthy, S; H Sass; H Langner; P Schumann; R M Kroppenstedt; S Spring; J Overmann; R F Rosenzweig (2006). "Desulfosporosinus lacus sp. nov., a sulfate-reducing bacterium isolated from pristine freshwater lake sediments". International Journal of Systematic and Evolutionary Microbiology. 56 (12): 2729–2736. doi:10.1099/ijs.0.63610-0. PMID 17158969.
  12. ^ Robertson, W J; J P Bowman; P D Franzmann; B J Mee (2001). "Desulfosporosinus meridiei sp. nov., a spore-forming sulfate-reducing bacterium isolated from gasolene-contaminated groundwater". International Journal of Systematic and Evolutionary Microbiology. 51 (1): 133–140. doi:10.1099/00207713-51-1-133. PMID 11211250.
  13. ^ Vandieken, Verona; Niemann, Helge; Engelen, Bert; Cypionka, HeribertYR 2017 (2017). "Marinisporobacter balticus gen. nov., sp. nov., Desulfosporosinus nitroreducens sp. nov. and Desulfosporosinus fructosivorans sp. nov., new spore-forming bacteria isolated from subsurface sediments of the Baltic Sea". International Journal of Systematic and Evolutionary Microbiology. 67 (6): 1887–1893. doi:10.1099/ijsem.0.001883. ISSN 1466-5034. PMID 28646634.{{cite journal}}: CS1 maint: numeric names: authors list (link)
  14. ^ Lee, Yong-Jin; Christopher S Romanek; Juergen Wiegel (2009). "Desulfosporosinus youngiae sp. nov., a spore-forming, sulfate-reducing bacterium isolated from a constructed wetland treating acid mine drainage". International Journal of Systematic and Evolutionary Microbiology. 59 (11): 2743–2746. doi:10.1099/ijs.0.007336-0. PMID 19625426.
  15. ^ Petzsch, Patrick; Poehlein, Anja; Johnson, D. Barrie; Daniel, Rolf; Schlömann, Michael; Mühling, Martin (2015). "Genome Sequence of the Moderately Acidophilic Sulfate-Reducing FirmicuteDesulfosporosinus acididurans(Strain M1T)". Genome Announcements. 3 (4): e00881-15. doi:10.1128/genomeA.00881-15. ISSN 2169-8287. PMC 4541271. PMID 26251501.
  16. ^ a b c d Pester, Michael; Evelyne Brambilla; Didier Alazard; Thomas Rattei; Thomas Weinmaier; James Han; Susan Lucas; Alla Lapidus; Jan-Fang Cheng; Lynne Goodwin; Sam Pitluck; Lin Peters; Galina Ovchinnikova; Hazuki Teshima; John C Detter; Cliff S Han; Roxanne Tapia; Miriam L Land; Loren Hauser; Nikos C Kyrpides; Natalia N Ivanova; Ioanna Pagani; Marcel Huntmann; Chia-Lin Wei; Karen W Davenport; Hajnalka Daligault; Patrick S G Chain; Amy Chen; Konstantinos Mavromatis; Victor Markowitz; Ernest Szeto; Natalia Mikhailova; Amrita Pati; Michael Wagner; Tanja Woyke; Bernard Ollivier; Hans-Peter Klenk; Stefan Spring; Alexander Loy (2012). "Complete Genome Sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T". Journal of Bacteriology. 194 (22): 6300–6301. doi:10.1128/JB.01392-12. PMC 3486391. PMID 23105050.
  17. ^ Abicht, Helge K.; Stefano Mancini; Olga V. Karnachuk; Marc Solioz (2011). "Genome Sequence of Desulfosporosinus sp. OT, an Acidophilic Sulfate-Reducing Bacterium from Copper Mining Waste in Norilsk, Northern Siberia". Journal of Bacteriology. 193 (21): 6104–6105. doi:10.1128/JB.06018-11. PMC 3194917. PMID 21994931.
  18. ^ J.P. Euzéby. "Desulfosporosinus". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-09-09.
  19. ^ Sayers; et al. "Desulfosporosinus". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-09-09.
  20. ^ "The LTP". Retrieved 20 November 2023.
  21. ^ "LTP_all tree in newick format". Retrieved 20 November 2023.
  22. ^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
  23. ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
  24. ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
  25. ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
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