Draft:Gget

Submission declined on 4 October 2024 by KylieTastic (talk).

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Declined by KylieTastic 2 seconds ago. Last edited by KylieTastic 2 seconds ago. Reviewer: Inform author.

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gget^[1] is a suite of software tools designed to perform common transcriptomics and proteomics data analysis tasks in a single line of code, including protein structure prediction using AlphaFold, gene set enrichment analysis, and querying of data from genomic databases such as Ensembl genome database project, National Center for Biotechnology Information, and UniProt.

gget is an open-source project that is available to users for free and can be used from Python (programming language), Bash (Unix shell), and R (programming language).

gget's user manual, documentation, and a link to the source code can be found at gget.bio.

References

^ Luebbert, Laura; Pachter, Lior (2023). "Efficient querying of genomic reference databases with gget". Bioinformatics. 39 (1). doi:10.1093/bioinformatics/btac836. PMC 9835474. PMID 36610989.

[1] Luebbert, Laura; Pachter, Lior (2023). "Efficient querying of genomic reference databases with gget". Bioinformatics. 39 (1). doi:10.1093/bioinformatics/btac836. PMC 9835474. PMID 36610989.

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