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Tathagata Dey | |
|---|---|
 Tathagata giving a talk at IIT Bombay | |
| Born | 2000 |
| Nationality | Indian |
| Alma mater | IIT Bombay |
| Scientific career | |
| Fields | Computer Science, Machine Learning, Artificial Intelligence, Natural Language Processing, Computational Biology and Bioinformatics |
| Institutions | Coupa Software Pvt. Ltd.
CFILT Lab, CSE, IIT Bombay LG Soft Pvt. Ltd. CIRE, Kolkata |
| Academic advisors | Prof. Pushpak Bhattacharyya |
| Website | https://www.cse.iitb.ac.in/~tathagata/ |
Tathagata is an AI Engineer and researcher working in Coupa Software Pvt. Ltd. He pursued his Masters in Computer Science and Engineering from IIT Bombay. Tathagata has a profound interest in Computer Science, Machine Learning, Artificial Intelligence, Natural Language Processing, Computational Biology and Bioinformatics. He authored 10 research publications and also secured an All India Rank of 21 in GATE Computer Science Exam.
Research Career
editTathagata started his research career working with Late Dr. Ashesh Nandy (known for his contributions in Nandy Plot.[1]), Dr. Subhas Basak and Dr. Smarajit Manna. His interests lie in GRANCH (Graphical Representation and Numerical Characterization[2]), Peptide Vaccine designing, Study of Mutations and Sequence descriptors. In this domain, he authored 5 conference papers along with 4 journal papers and a book chapter[3].
His most cited work is 'Identification and Computational Analysis of Mutations in SARS-CoV-2'[4] where he introduced the idea of qR characterization to study mutations in SARS-CoV-2. He developed '2D Polar Co-ordinate system for GRANCH' to analyse sequences based on amino-acids rather than conventional genomic studies[5]. Using this new algorithms he contributed in cluster of strain analysis of different pathogens[6][7]. He authored multiple research articles describing a pipeline for peptide vaccine designing for Ebola virus[8][9] and Covid-19[10][11]. Tathagata also contributed in a book named 'Big Data Analytics in Chemoinformatics and Bioinformatics' where he talked about Alignment-free Sequence Descriptors applying on Zika, SARS, MERS and COVID-19[12].
Later on he worked in the Centre For Indian Language Technology (CFILT Lab) in Department of Computer Science and Engineering, IIT Bombay. He was guided by Prof. Pushpak Bhattacharyya for his thesis. His thesis work on 'Table to text Generation with Subjectivity and Objectivity' has been published in the arxiv as well[13]
- ^ Ghosh, Ambarnil; Nandy, Ashesh (2011). "Graphical representation and mathematical characterization of protein sequences and applications to viral proteins". Advances in Protein Chemistry and Structural Biology. 83: 1–42. doi:10.1016/B978-0-12-381262-9.00001-X. ISBN 978-0-12-381262-9. ISSN 1876-1631. PMC 7150266. PMID 21570664.
- ^ Li, Chun; Fei, Wenchao; Zhao, Yan; Yu, Xiaoqing (March 2016). "Novel Graphical Representation and Numerical Characterization of DNA Sequences". Applied Sciences. 6 (3): 63. doi:10.3390/app6030063. ISSN 2076-3417.
- ^ "ORCID". orcid.org. Retrieved 2024-11-20.
- ^ Dey, Tathagata; Chatterjee, Shreyans; Manna, Smarajit; Nandy, Ashesh; Basak, Subhas C. (2021-02-01). "Identification and computational analysis of mutations in SARS-CoV-2". Computers in Biology and Medicine. 129: 104166. doi:10.1016/j.compbiomed.2020.104166. ISSN 0010-4825. PMC 7837166. PMID 33383528.
- ^ Dey, Tathagata; Biswas, Subhamoy; Chatterjee, Shreyans; Manna, Smarajit; Nandy, Ashesh; Basak, Subhas (2020-04-11). "2D Polar Co-ordinate Representation of Amino Acid Sequences With some applications to Ebola virus, SARS and SARS-CoV-2 (COVID-19)". Proceedings of MOL2NET 2020, International Conference on Multidisciplinary Sciences, 6th edition. MDPI. p. 6790. doi:10.3390/mol2net-06-06790.
- ^ Chatterjee, Shreyans; Dey, Tathagata; Manna, Smarajit (2020). "Emergence of a Pathogenic Strain of COVID-19". Journal of Bioinformatics and Systems Biology. 03 (4). doi:10.26502/jbsb.5107016.
- ^ Vračko, Marjan; Basak, Subhash C.; Dey, Tathagata; Nandy, Ashesh (December 2021). "Cluster Analysis of Coronavirus Sequences using Computational Sequence Descriptors: With Applications to SARS, MERS and SARS-CoV-2 (CoVID-19)". Current Computer-Aided Drug Design. 17 (7): 936–945. doi:10.2174/1573409917666210202092646. PMID 33530913.
- ^ Biswas, Subhamoy; Dey, Tathagata; Chatterjee, Shreyans; Manna, Smarajit; Nandy, Ashesh; Das, Sukhen; Nandy, Papiya; Basak, Subhash C (January 2020). "Novel Algorithms for in Silico Peptide Vaccine Design with Reference to Ebola Virus". 2020 International Conference on Computer, Electrical & Communication Engineering (ICCECE). IEEE. pp. 1–8. doi:10.1109/ICCECE48148.2020.9223075. ISBN 978-1-7281-4476-4.
- ^ Biswas, Subhamoy; Chatterjee, Shreyans; Dey, Tathagata; Manna, Smarajit; Nandy, Ashesh; Das, Sukhen; Nandy, Papiya; Basak, Subhash (2019-11-24). "A novel approach to Peptide Vaccine Design for Ebola virus". Proceedings of MOL2NET 2019, International Conference on Multidisciplinary Sciences, 5th edition. MDPI. p. 6712. doi:10.3390/mol2net-05-06712.
- ^ Biswas, Subhamoy; Manna, Smarajit; Dey, Tathagata; Chatterjee, Shreyans; Dey, Sumanta (March 2022). "Identification of Generalized Peptide Regions for Designing Vaccine Effective for All Significant Mutated Strains of SARS-CoV-2". Combinatorial Chemistry & High Throughput Screening. 25 (3): 414–428. doi:10.2174/1386207324666210601122820. PMID 34077341.
- ^ Biswas, Subhamoy; Chatterjee, Shreyans; Dey, Tathagata; Dey, Sumanta; Manna, Smarajit; Nandy, Ashesh; Basak, Subhash (2020-04-09). "In Silico Approach for Peptide Vaccine Design for CoVID 19". Proceedings of MOL2NET 2020, International Conference on Multidisciplinary Sciences, 6th edition. MDPI. p. 6787. doi:10.3390/mol2net-06-06787.
- ^ Sen, Dwaipayan; Dey, Tathagata; Vračko, Marjan; Nandy, Ashesh; Basak, Subhash C. (2023), "Applications of alignment-free sequence descriptors in the characterization of sequences in the age of big data: a case study with Zika virus, SARS, MERS, and COVID-19", Big Data Analytics in Chemoinformatics and Bioinformatics, Elsevier, pp. 359–390, doi:10.1016/b978-0-323-85713-0.00024-4, ISBN 978-0-323-85713-0, retrieved 2024-11-20
- ^ Dey, Tathagata; Bhattacharyya, Pushpak (2024). "Facts-and-Feelings: Capturing both Objectivity and Subjectivity in Table-to-Text Generation". arXiv:2406.10560.
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