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Flavobacteriales

The order Flavobacteriales comprises several families of environmental bacteria.[3]

Flavobacteriales
Bergeyella zoohelcum
Bergeyella zoohelcum
Scientific classification Edit this classification
Domain: Bacteria
Phylum: Bacteroidota
Class: Flavobacteriia
Order: Flavobacteriales
Bernardet 2012[1]
Families[2]

Comparative genomics and molecular signatures

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Flavobacteriales is of one of the orders from the phylum Bacteroidota.[2] Comparative genomic studies have identified several conserved indels, as well as 27 proteins that are uniquely shared by different sequenced Flavobacteriales and Bacteroidota species supporting this inference.[4][5] Additionally, these studies have also identified 38 proteins that seem to be specific for the species from the order Flavobacteriales.[5] Of these proteins, 26 were present in all sequenced species, while the remaining 12 were missing in only one or two species. These signature proteins provide potential molecular markers for this order. Several proteins have also been identified which are unique to the Flavobacteriales and Bacteroidales orders, indicating the species from these two orders shared a common ancestor exclusive of other Bacteroidota.[5]

Phylogeny

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Phylogeny[6] is the study of representation of evolutionary history and relationships between groups of organisms that are living. Closely related to phylogeny, the currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature, the naming and classification of living organisms.[2] Phytogenetic's requires large datasets through strenuous strands of experiments through mathematical models.[7] To create the phylogenic relationships between the relationship of the list of twenty-one bacterium strands, in a tree like design, molecular evolutionary genetics analysis with the Kimura two-parameter model can be used.[8] This is useful for analyzing the phytogenetic relationship among flavobacteriales fish-pathogens. [8] It tells you whether a species of the bacterias are close or not.[8]

Whole-genome based phylogeny[9][a] 16S rRNA based LTP_12_2021[10][11][12] GTDB 07-RS207 by Genome Taxonomy Database[13][14][15]
Flavobacteriales

Vicingaceae Bowman 2021

Salibacteraceae Bowman 2021

Luteibaculaceae Bowman 2021

Cryomorphaceae Bowman et al. 2003

Crocinitomicaceae Munoz et al. 2016

Schleiferiaceae Albuquerque et al. 2011

Blattabacteriaceae Kambhampati 2012

Weeksellaceae García-López et al. 2020

"Ca. Merdimorpha" Gilroy et al. 2021

Ichthyobacteriaceae Takano et al. 2016

Flavobacteriaceae Reichenbach 1992

Notes

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  1. ^ Blattabacteriaceae is not included in this phylogenetic tree.

See also

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References

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  1. ^ Bernardet J-F. (2010). "Order I. Flavobacteriales ord. nov.". In Krieg NR, Staley JT, Brown DR, Hedlund BP, Paster BJ, Ward NL, Ludwig W, Whitman WB (eds.). Bergey's Manual of Systematic Bacteriology. Vol. 4 (2nd ed.). New York, NY: Springer. p. 105.
  2. ^ a b c Euzéby JP, Parte AC. "Flavobacteriales". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 29, 2021.
  3. ^ Boone DR, Castenholz RW, eds. (2001). Bergey's Manual of Systematic Bacteriology. Vol. 1 (The Archaea and the deeply branching and phototrophic Bacteria) (2nd ed.). New York, NY: Springer-Verlag. pp. 465–466.
  4. ^ Gupta RS. (2004). "The phylogeny and signature sequences characteristics of Fibrobacteres, Chlorobi, and Bacteroidetes". Critical Reviews in Microbiology. 30 (2): 123–140. doi:10.1080/10408410490435133. PMID 15239383. S2CID 24565648.
  5. ^ a b c Gupta RS, Lorenzini, E. (2007). "Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species". BMC Evolutionary Biology. 7 (1): 71. Bibcode:2007BMCEE...7...71G. doi:10.1186/1471-2148-7-71. PMC 1887533. PMID 17488508.
  6. ^ "Phylogeny of major groups", Invertebrate Relationships, Cambridge University Press, pp. 161–162, 1990-02-15, doi:10.1017/cbo9780511623547.009, ISBN 978-0-521-33064-0, retrieved 2024-10-23
  7. ^ "Phylogeny of major groups", Invertebrate Relationships, Cambridge University Press, pp. 161–162, 1990-02-15, doi:10.1017/cbo9780511623547.009, ISBN 978-0-521-33064-0, retrieved 2024-10-23
  8. ^ a b c Mun, S.; Lee, J.; Lee, S.; Han, K.; Ahn, T. Y. (2013). "Phylogeny of Flavobacteria Group Isolated from Freshwater Using Multilocus Sequencing Analysis". Genomics & Informatics. 11 (4): 272–276. doi:10.5808/GI.2013.11.4.272. PMC 3897856. PMID 24465240.
  9. ^ García-López M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Göker M (2019). "Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes". Front Microbiol. 10: 2083. doi:10.3389/fmicb.2019.02083. PMC 6767994. PMID 31608019.
  10. ^ "The LTP". Retrieved 23 February 2021.
  11. ^ "LTP_all tree in newick format". Retrieved 23 February 2021.
  12. ^ "LTP_12_2021 Release Notes" (PDF). Retrieved 23 February 2021.
  13. ^ "GTDB release 07-RS207". Genome Taxonomy Database. Retrieved 20 June 2022.
  14. ^ "ar53_r207.sp_label". Genome Taxonomy Database. Retrieved 20 June 2022.
  15. ^ "Taxon History". Genome Taxonomy Database. Retrieved 20 June 2022.


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