Jon or Jonathan Cooper may refer to:
- Jon Cooper (ice hockey) (born 1967), Canadian-American ice hockey coach
- Jon Cooper (American football) (born 1986), American football center
- Jonathan Cooper (born 1990), American football guard
- Jonathan Cooper (bioengineering) (born 1961), professor of bioengineering
- Jonathan Cooper (priest) (1820–1898), Irish priest
- Jonathan Cooper (lawyer) (1962–2021), British barrister and human rights activist
- Jonathon Cooper (born 1998), American football defensive end
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