The following are the national records in track cycling in Estonia maintained by Estonia's national cycling federation: Estonian Cycling Federation.
Men
edit| Event | Record | Athlete | Date | Meet | Place | Ref |
|---|---|---|---|---|---|---|
| Flying 200 m time trial | 10.221 | Urmo Valter | 1990 |  Moscow, Soviet Union
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| Flying 500 m time trial | 28.330 | Urmo Valter | 1987 | Moscow, Soviet Union
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| 1 km time trial | 1:05.061 | Daniel Novikov | 3 September 2008 | European U23 Championships |  Pruszków, Poland
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| 4000m individual pursuit | 4:37.232 | Juri Beljakov | 1985 | Moscow, Soviet Union
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| 4000m team pursuit | 4:24.550 | Urmas Tölp Eduard Beljakov Mark Revjagin Veikko Kiisk |
1990 | Moscow, Soviet Union
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Women
edit| Event | Record | Athlete | Date | Meet | Place | Ref |
|---|---|---|---|---|---|---|
| Flying 200 m time trial | 11.050 | Erika Salumäe | 1995 | World Cup |  Quito, Ecuador
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| Flying 500 m time trial | 29.655 | Erika Salumäe | 6 August 1987 | Moscow, Soviet Union
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| 500 m time trial | 35.151 | Erika Salumäe | 1995 | World Cup | Quito, Ecuador
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| 3000m individual pursuit | 3:54.537 | Erika Salumäe | 1985 | Moscow, Soviet Union
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| 3000m team pursuit |