- Disc 1: "Help Wanted", "Reef Blower", "Tea at the Treedome", "Bubblestand", "Ripped Pants", "Jellyfishing", "Plankton!", "Naughty Nautical Neighbors", "Boating School", "Pizza Delivery", "Home Sweet Pineapple", "Mermaid Man and Barnacle Boy", "Pickles", "Hall Monitor", "Jellyfish Jam", "Sandy's Rocket", and "Squeaky Boots"
- Disc 2: "Nature Pants", "Opposite Day", "Culture Shock", "F.U.N.", "MuscleBob BuffPants", "Squidward the Unfriendly Ghost", "The Chaperone", "Employee of the Month", "Scaredy Pants", "I Was a Teenage Gary", "SB-129", "Karate Choppers", "Sleepy Time", "Suds", "Valentine's Day", and "The Paper"
- Disc 3: "Arrgh!", "Rock Bottom", "Texas", "Walking Small", "Fools in April", "Neptune's Spatula", "Hooky", "Mermaid Man and Barnacle Boy II", "Your Shoe's Untied", "Squid's Day Off", "Something Smells", "Bossy Boots", "Big Pink Loser", "Bubble Buddy", "Dying for Pie", and "Imitation Krabs"
- Disc 4: "Wormy", "Patty Hype", "Grandma's Kisses", "Squidville", "Prehibernation Week", "Life of Crime", "Christmas Who?", "Survival of the Idiots", "Dumped", "No Free Rides", "I'm Your Biggest Fanatic", "Mermaid Man and Barnacle Boy III", "Squirrel Jokes", "Pressure", and "The Smoking Peanut"
- Disc 5: "Shanghaied" (original 22-minute broadcast version), "Gary Takes a Bath", "Welcome to the Chum Bucket", "Frankendoodle", "The Secret Box", "Band Geeks", "Graveyard Shift", "Krusty Love", "Procrastination", "I'm with Stupid", "Sailor Mouth", "Artist Unknown", "Jellyfish Hunter", and "The Fry Cook Games"
- Disc 6: "Sandy, SpongeBob, and the Worm", "Squid on Strike", "The Algae's Always Greener", "SpongeGuard on Duty", "Club SpongeBob", "My Pretty Seahorse", "The Bully", "Just One Bite", "Nasty Patty", "Idiot Box", "Mermaid Man and Barnacle Boy IV", "Doing Time", "Snowball Effect", "One Krabs Trash", "As Seen on TV", and "Can You Spare a Dime?"
- Disc 7: "No Weenies Allowed", "Squilliam Returns", "Krab Borg", "Rock-a-Bye Bivalve", "Wet Painters", "Krusty Krab Training Video", "Party Pooper Pants", "Chocolate with Nuts", "Mermaid Man and Barnacle Boy V", "New Student Starfish", "Clams", "Ugh", "The Great Snail Race", and "Mid-Life Crustacean"
- Disc 8: "Born Again Krabs", "I Had an Accident", "Krabby Land", "The Camping Episode", "Missing Identity", "Plankton's Army", "The Sponge Who Could Fly", "SpongeBob Meets the Strangler", "Pranks a Lot", "Fear of a Krabby Patty", "Shell of a Man", "The Lost Mattress", "Krabs vs. Plankton", and "Have You Seen This Snail?"
- Disc 9: "Skill Crane", "Good Neighbors", "Selling Out", "Funny Pants", "Dunces and Dragons", "Enemy In-Law", "Mermaid Man and Barnacle Boy VI: The Motion Picture", "Patrick SmartPants", "SquidBob TentaclePants", "Krusty Towers", "Mrs. Puff, You're Fired", "Ghost Host", "Chimps Ahoy", "Whale of a Birthday", and "Karate Island"
- Disc 10: "All That Glitters", "Wishing You Well", "New Leaf", "Once Bitten", "Bummer Vacation", "Wigstruck", "Squidtastic Voyage", "That's No Lady", "The Thing", "Hocus Pocus", "Driven to Tears", "Rule of Dumb", "Born to Be Wild", "Best Frenemies", "The Pink Purloiner", and "Squid Wood"
- Disc 11: "Best Day Ever", "The Gift of Gum", "Friend or Foe", "The Original Fry Cook", "Night Light", "Rise and Shine", "Waiting", "Fungus Among Us", "Spy Buddies", "Boat Smarts", "Good Ol' Whatshisname", "New Digs", "Krabs à la Mode", "Roller Cowards", "Bucket Sweet Bucket", "To Love a Patty", and "Breath of Fresh Squidward"
- Disc 12: "Money Talks", "SpongeBob vs. the Patty Gadget", "Slimy Dancing", "The Krusty Sponge", "Sing a Song of Patrick", "A Flea in Her Dome", "The Donut of Shame", "The Krusty Plate", "Goo Goo Gas", "Le Big Switch", "Atlantis SquarePantis", "Picture Day", "Pat No Pay", "BlackJack", "Blackened Sponge", and "Mermaid Man vs. SpongeBob"
- Disc 13: "The Inmates of Summer", "To Save a Squirrel", "Pest of the West", "20,000 Patties Under the Sea", "The Battle of Bikini Bottom", "What Ever Happened to SpongeBob?", "The Two Faces of Squidward", "SpongeHenge", "Banned in Bikini Bottom", and "Stanley S. SquarePants"
- Disc 14: "Spongicus", "Suction Cup Symphony", "House Fancy", "Krabby Road", "Penny Foolish", "Nautical Novice", "Not Normal", "Gone", "SpongeBob SquarePants vs. The Big One", "A Life in a Day", "Sun Bleached", "Giant Squidward", "No Nose Knows", and "Patty Caper"
- Disc 15: "Plankton's Regular", "To SquarePants or Not to SquarePants", "Squid's Visit", "The Splinter", "Slide Whistle Stooges", "Boating Buddies", "The Krabby Kronicle", "The Slumber Party", "Grooming Gary", and "Truth or Square" (extended version)
- Disc 16: "Porous Pockets", "Choir Boys", "Krusty Krushers", "The Card", "Dear Vikings", "Ditchin'", "Pineapple Fever", "Chum Caverns", "Grandpappy the Pirate", "Cephalopod Lodge", "Shuffleboarding", and "Professor Squidward"
- Disc 17: "Pet or Pests", "Komputer Overload", "Gullible Pants", "Overbooked", "No Hat for Pat", "Toy Store of Doom", "The Clash of Triton", "Sand Castles in the Sand", "Shell Shocked", "Chum Bucket Supreme", and "Single Cell Anniversary"
- Disc 18: "Tentacle-Vision", "I Heart Dancing", "Growth Spout", "Stuck in the Wringer", "Someone's in the Kitchen with Sandy", "The Inside Job", "Greasy Buffoons", "Model Sponge", "Keep Bikini Bottom Beautiful", "A Pal for Gary", "Yours, Mine, and Mine", "Kracked Krabs", "The Curse of Bikini Bottom", and "Squidward in Clarinetland"
- Disc 19: "SpongeBob's Last Stand", "Back to the Past", "The Bad Guy Club for Villains", "A Day Without Tears", "Summer Job", "One Coarse Meal", "Gary in Love", "The Play's the Thing", "Rodeo Daze", "Gramma's Secret Recipe", and "The Cent of Money"
- Disc 20: "The Monster Who Came to Bikini Bottom", "Welcome to the Bikini Bottom Triangle", "The Curse of the Hex", "The Main Drain", "Trenchbillies", "Sponge-Cano!", "The Great Patty Caper", "That Sinking Feeling", "Karate Star", "Buried in Time", "Enchanted Tiki Dreams", "The Abrasive Side", and "Earworm"
- Disc 21: "Hide and Then What Happens?", "Shellback Shenanigans", "The Masterpiece", "Whelk Attack", "You Don't Know Sponge", "Tunnel of Glove", "Krusty Dogs", "The Wreck of the Mauna Loa", "New Fish in Town", "Love That Squid", "Big Sister Sam", and "Perfect Chemistry"
- Disc 22: "Accidents Will Happen", "The Other Patty", "Drive Thru", "The Hot Shot", "A Friendly Game", "Sentimental Sponge", "Frozen Face-Off", "Squidward's School for Grown-Ups", "Oral Report", "Sweet and Sour Squid", and "The Googly Artiste"
- Disc 23: "A SquarePants Family Vacation", "Patrick's Staycation", "Walking the Plankton", "Mooncation", "Mr. Krabs Takes a Vacation", "Ghoul Fools", "Mermaid Man Begins", "Plankton's Good Eye", "Barnacle Face", "Pet Sitter Pat", "House Sittin' for Sandy", and "Smoothe Jazz at Bikini Bottom"
- Disc 24: "Bubble Troubles", "The Way of the Sponge", "The Krabby Patty That Ate Bikini Bottom", "Bubble Buddy Returns", "Restraining SpongeBob", "Fiasco!", "Are You Happy Now?", "Planet of the Jellyfish", "Free Samples", "Home Sweet Rubble", "Karen 2.0", "InSPONGEiac", "Face Freeze!", and "Glove World R.I.P."
- Disc 25: "Squiditis", "Demolition Doofus", "Treats!", "For Here or to Go", "It's a SpongeBob Christmas!", "Super Evil Aquatic Villain Team Up is Go!", "Chum Fricassee", "The Good Krabby Name", "Move It or Lose It", and "Hello Bikini Bottom!"
- Disc 26: "Extreme Spots", "Squirrel Record", "Patrick-Man!", "Gary's New Toy", "License to Milkshake", "Squid Baby", "Little Yellow Book", "Bumper to Bumper", "Eek, an Urchin!", "Squid Defense", "Jailbreak!", "Evil Spatula", and "It Came from Goo Lagoon"
- Disc 27: "Safe Deposit Krabs", "Plankton's Pet", "Don't Look Now", "Séance Shméance", "Kenny the Cat", "Yeti Krabs", "SpongeBob You're Fired", "Lost in Bikini Bottom", "Tutor Sauce", "Squid Plus One", "The Executive Treatment", "Company Picnic", and "Pull Up a Barrel"
- Disc 28: "Sanctuary!", "What's Eating Patrick?", "Patrick! The Game", "The Sewers of Bikini Bottom", "SpongeBob LongPants", "Larry's Gym", "The Fish Bowl", "Married to Money", "Mall Girl Pearl", "Two Thumbs Down", "Sharks vs. Pods", "CopyBob DittoPants", "Sold!", and "Lame and Fortune"
- Disc 29: "Goodbye, Krabby Patty?", "Sandy's Nutmare", "Bulletin Board", "Food Con Castaways", "Snail Mail", "Pineapple Invasion", "Salsa Imbecilicus", "Mutiny on the Krusty", and "The Whole Tooth"
- Disc 30: "Whirly Brains", "Mermaid Pants", "Unreal Estate", "Code Yellow", "Mimic Madness", "House Worming", "Snooze You Lose", "Krusty Katering", "SpongeBob's Place", "Plankton Gets the Boot", "Life Insurance", "Burst Your Bubble", "Plankton Retires", and "Trident Trouble"
- Disc 31: "The Incredible Shrinking Sponge", "Sportz?", "The Getaway", "Lost and Found", "Patrick's Coupon", "Out of the Picture", "Feral Friends", and "Don't Wake Patrick"
- Disc 32: "Cave Dwelling Sponge", "The Clam Whisperer", "Spot Returns", "The Check-Up", "Spin the Bottle", "There's a Sponge in My Soup", "Man Ray Returns", "Larry the Floor Manager", "The Legend of Boo-Kini Bottom", "No Pictures Please", "Stuck on the Roof", "Krabby Patty Creature Feature", "Teacher's Pests", "Sanitation Insanity", "Bunny Hunt", "Squid Noir", and "Scavenger Pants"
- Disc 33: "Cuddle E. Hugs", "Pat the Horse", "Chatterbox Gary", "Don't Feed the Clowns", "Drive Happy", "Old Man Patrick", "Fun-Sized Friends", "Grandmum's the Word", "Doodle Dimension", "Moving Bubble Bass", "High Sea Diving", "Bottle Burglars", "My Leg!", "Ink Lemonade", "Mustard O' Mine", "Shopping List", "Whale Watching", and "Krusty Kleaners"
- Disc 34: "Patnocchio", "ChefBob", "Plankton Paranoia", "Library Cards", "Call the Cops", "Surf N' Turf", "Goons on the Moon", "Appointment TV", "Karen's Virus", "The Grill is Gone", "The Night Patty", "Bubbletown", "Girls' Night Out", "Squirrel Jelly", and "The String"
- Disc 35: "FarmerBob", "Gary & Spot", "The Nitwitting", "The Ballad of Filthy Muck", "The Krusty Slammer", "Pineapple RV", "Gary's Got Legs", "King Plankton", "Plankton's Old Chum", "Stormy Weather", "Swamp Mates", "One Trick Sponge", "The Krusty Bucket", "Squid's on a Bus", "Sandy's Nutty Nieces", "Insecurity Guards", "Broken Alarm", and "Karen's Baby"
- Disc 36: "Shell Games", "Senior Discount", "Mind the Gap", "Dirty Bubble Returns", "Jolly Lodgers", "Biddy Sitting", "SpongeBob's Big Birthday Blowout", "SpongeBob in RandomLand", "SpongeBob's Bad Habit", "Handemonium", "Breakin'", "Boss for a Day", "The Goofy Newbie", "The Ghost of Plankton", and "My Two Krabses"
- Disc 37: "Knock Knock, Who's There?", "Pat Hearts Squid", "Lighthouse Louie", "Hiccup Plague", "A Cabin in the Kelp", "The Hankering", "Who R Zoo?", "Plankton's Intern", "Patrick's Tantrum", "Bubble Bass's Tab", "Kooky Cooks", "Escape from Beneath Glove World", "Krusty Koncessionaires", and "Dream Hoppers"
- Disc 38: "A Place for Pets", "Lockdown for Love", "Under the Small Top", "Squidward's Sick Daze", "Goofy Scoopers", "Pat the Dog", "Something Narwhal This Way Comes", "C.H.U.M.S", "SpongeBob's Road to Christmas", "Potato Puff", "There Will Be Grease", "The Big Bad Bubble Bass", and "Sea-Man Sponge Haters Club"
- Disc 39: "Food PBFFT! Truck", "Upturn Girls", "Say Awww!", "Patrick the Mailman", "Captain Pipsqueak", "Plane to Sea", "Squidferatu", "Slappy Daze", "Welcome to Binary Bottom", "You're Going to Pay... Phone", "A Skin Wrinkle in Time", "Abandon Twits", "Wallhalla", "Salty Sponge", and "Karen for Spot"
- Disc 40: "Arbor Day Disarray", "Ain't That the Tooth", "Ma and Pa's Big Hurrah", "Yellow Pavement", "The Flower Plot", "SpongeBob on Parade", "Delivery to Monster Island", "Ride Patrick Ride", "Hot Crossed Nuts", "Sir Urchin and Snail Fail", "Friendiversary", "Mandatory Music", "Dopey Dick", and "Plankton and the Beanstalk"
- Disc 41: "My Friend Patty", "FUN-Believable", "Spatula of the Heavens", "Gary's Playhouse", "Swimming Fools", "The Goobfather", "SquidBird", "Allergy Attack!", "Big Top Flop", and "Sandy, Help Us!"
- Disc 44: Special features
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