Riboswitch_s0670 is a probable SAM riboswitch identified by RNA deep sequencing of Clostridioides difficile 630.[1] Close matches are found with members of the SAM-I-IV-variant family, however s0670 and several sequences in this alignment do not match any Rfam family. Downstream genes are either S-adenosylmethionine synthetase (most frequently), S-ribosylhomocysteine lyase, O-acetylhomoserine (thiol)-lyase O-acetylhomoserine sulfhydrylase, homoserine dehydrogenase.
| riboswitch_s0670 | |
|---|---|
 Predicted secondary structure and sequence conservation of riboswitch_s0670 | |
| Identifiers | |
| Symbol | riboswitch_s0670 |
| Rfam | XXXX |
| Other data | |
| RNA type | Cis-reg; Riboswitch; |
| Domain(s) | Bacteria |
| PDB structures | PDBe |
References
edit- ^ Soutourina OA, Monot M, Boudry P, Saujet L, Pichon C, Sismeiro O; et al. (2013). "Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile". PLOS Genet. 9 (5): e1003493. doi:10.1371/journal.pgen.1003493. PMC 3649979. PMID 23675309.
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