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Unipept is an open source research tool for biodiversity analysis of metaproteomics samples. It also contains a tool to select peptides to use as biomarker and a tool to compare the genome of organisms based on their protein content.[2][3] The software is developed at Ghent University.
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| Original author(s) | Ghent University |
|---|---|
| Developer(s) | Bart Mesuere |
| Initial release | 3 February 2011 |
| Stable release | 4.1.1
/ 21 January 2019[1] |
| Repository | |
| Written in | Ruby, JavaScript |
| Type | Bioinformatics, Data visualization |
| License | MIT License |
| Website | unipept |
Unipept consists of a web application and a stand-alone command line tool. The web application uses interactive data visualizations to explore datasets. The command line tool contains the same functionality, but is designed for use in automated data processing pipelines.[4]
References
edit- ^ "Unipept Releases". GitHub. Retrieved April 14, 2019.
- ^ Mesuere, Bart; Devreese, Bart; Debyser, Griet; Aerts, Maarten; Vandamme, Peter; Dawyndt, Peter (2012). "Unipept: Tryptic Peptide-Based Biodiversity Analysis of Metaproteome Samples". Journal of Proteome Research. 11 (12): 5773–80. doi:10.1021/pr300576s. ISSN 1535-3893. PMID 23153116.
- ^ Mesuere, Bart; Debyser, Griet; Aerts, Maarten; Devreese, Bart; Vandamme, Peter; Dawyndt, Peter (2015). "The Unipept metaproteomics analysis pipeline". Proteomics. 15 (8): 1437–1442. doi:10.1002/pmic.201400361. ISSN 1615-9853. PMID 25477242. S2CID 43820480.
- ^ "Unipept CLI documentation". Retrieved August 24, 2015.
External links
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