MALDI is a low energy ionisation technique since the analyte becomes charged via a chemical reaction – generates low energy [M+H]+ ions
Analyte remains intact, no fragmentation
MALDI is not suitable for small molecules
Matrix molecules are present and also have low masses, so they interfere with the mass spectrum
Molecules with mass < 1000 Da will be lost in the matrix signal
MALDI is ideal for ionising large biomolecules (e.g. peptides, proteins, DNA) and synthetic polymers, which might otherwise fragment and prevent the molecular ion from being observed
Can very easily obtain the mass each protein in a mixture of proteins by MALDI-MS
In fact, MALDI is the only way to detect the masses of proteins directly