Pseudomonas sRNA P11 is a ncRNA that was predicted using bioinformatic tools in the genome of the opportunistic pathogen Pseudomonas aeruginosa and its expression verified by northern blot analysis.[1] P11 is located between a putative threonine protein kinase and putative nitrate reductase and is conserved in several Pseudomonas species. P11 has a predicted Rho independent terminator at the 3′ end but the function of P11 is unknown.[1]
| Pseudomonas sRNA P11 | |
|---|---|
 Predicted secondary structure and sequence conservation of P11 | |
| Identifiers | |
| Symbol | P11 |
| Rfam | RF00625 |
| Other data | |
| RNA type | Gene |
| Domain(s) | Bacteria |
| SO | SO:0000655 |
| PDB structures | PDBe |
See also
editReferences
edit- ^ a b Livny J, Brencic A, Lory S, Waldor MK (2006). "Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2". Nucleic Acids Res. 34 (12): 3484–3493. doi:10.1093/nar/gkl453. PMC 1524904. PMID 16870723.
External links
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